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"RasMol & Chime: Molecular Visualization Freeware"

"RasMol & Chime: Molecular Visualization Freeware"

3D Molecular Designs - 3B Scientific

Discover innovative products from 3D Molecular Designs, now part of the 3B Scientific family. Explore hands-on kits for biology and chemistry education.

3DChem.com - Chemistry, Structures, and 3D Molecules

A collection of interactive 3D animations and structures for chemistry students and teachers, provided by the University of Liverpool.

ACD/ChemSketch - Chemical Drawing Software

A chemically intelligent drawing interface to draw various chemical structures. Includes 2D and 3D viewing capabilities.

Avogadro: Advanced Molecular Editor

An advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, and materials science.

Banque de molélcules et d"ions ne contenant pas d"élélments de transition

Banque de molélcules et d"ions ne contenant pas d"élélments de transition

BioMolecular Explorer 3D

BioMolecular Explorer 3D

BioMolecular Tutorials in Chime

BioMolecular Tutorials in Chime

Center for Molecular Modeling (CMM) | NIH

The CMM provides collaborative research and consultation in computational chemistry and molecular modeling to the National Institutes of Health (NIH) intramural research community.

Chemie in vier Dimensionen

Chemie in vier Dimensionen

ChemSpider - The free chemical database

A free chemical structure database providing fast search access to over 100 million structures from hundreds of data sources. Provided by the Royal Society of Chemistry.

Chime Resources

Chime Resources

Chmoogle

Chmoogle

Cochranes of Oxford Ltd - Molecular Models

A leading supplier of molecular models and science education equipment for schools, universities, and research institutions worldwide.

Computational Chemistry - Wikibooks

An open-content textbook on computational chemistry, covering topics from molecular mechanics to ab initio methods. A collaborative resource for students and researchers.

Drug Discovery & Development Solutions | Clarivate

Clarivate provides intelligence and insights for drug discovery and development, incorporating data from legacy sources like Prous Science.

DrugBank Online

A comprehensive, freely accessible, online database containing information on drugs and drug targets. A key bioinformatics and cheminformatics resource.

ExPASy

ExPASy

GAMESS-UK - Computational Chemistry Software

GAMESS-UK is a package for ab initio molecular electronic structure calculations. Maintained and distributed by UK"s Collaborative Computational Project 1 (CCP1).

Gaussian, Inc. - Support and Technical Resources

Official support page for the Gaussian software suite. Provides access to technical information, documentation, FAQs, and tips for computational chemistry calculations.

Ghemical-a cross-platform computational chemistry software package

Scientific paper describing the Ghemical software. Physical Chemistry Chemical Physics, 2001, 3, 4771-4777. Published by the Royal Society of Chemistry (RSC).

gOpenMol

A tool for the visualization and analysis of molecular structures and their chemical properties. Hosted by CSC - IT Center for Science, Finland.

Hypercube, Inc. - Support for HyperChem

Official support portal for HyperChem software. Provides access to documentation, technical support, and resources for users of the molecular modeling software.

Indiana University Molecular Structure Center

Indiana University Molecular Structure Center

Indigo Instruments

Indigo Instruments

Jmol and JSmol: An open-source HTML5/Java viewer for chemical structures

JSmol is a JavaScript-based molecular viewer that runs in any modern web browser, enabling the display of molecules, crystals, and biomolecules without plugins.

MacroModel

MacroModel

MathMol - Mathematics and Molecules K-12

An NSF-funded project at New York University (NYU) to develop instructional materials and activities for K-12 students, integrating molecular modeling and mathematics.

MathMol Library of 3-D Molecular Structures

A library of molecular structures provided by the MathMol K-12 project at New York University (NYU), designed for educational use.

MathMol Library of 3-D Molecular Structures

A library of molecular structures provided by the MathMol K-12 project at New York University (NYU), designed for educational use.

Molecular Modeling of Inorganic Compounds, 3rd Edition

The official publisher page for the textbook by Peter Comba, et al., a key resource for learning the theory and application of molecular modeling to inorganic systems.

Molecule of the Month

Molecule of the Month

Molecule of the Month - PDB-101

An educational resource from RCSB PDB that presents a new molecule each month, providing a detailed, illustrated introduction to its structure and function.

Molecule of the Month - University of Bristol

A long-running educational website featuring a different molecule each month, with information about its properties, uses, and chemical significance.

Molecule Shapes - PhET Interactive Simulations

Explore molecule shapes by building molecules in 3D! See how molecule geometry changes with different numbers of bonds and lone pairs. From the University of Colorado Boulder.

MolView

An intuitive, open-source web application for molecular viewing and chemical structure editing that runs in any modern web browser.

NCBI Structure Database (MMDB)

The Molecular Modeling Database (MMDB) from NIH contains experimentally determined 3D biomolecular structures. It provides tools for searching and visualization.

OpenMolcas - Computational Chemistry Software

The official homepage for OpenMolcas, a quantum chemistry software package developed by scientists. It is used to study the electronic structure of molecules.

ORBKIT: A Modular Python Toolbox for Post-Processing Quantum Chemical Calculations

An open-source Python program for post-processing quantum chemistry calculations. It is particularly useful for analyzing and visualizing molecular orbitals.

PubChem

PubChem is the world"s largest collection of freely accessible chemical information. Search chemicals by name, molecular formula, structure, and other identifiers.

RCSB PDB: Research Collaboratory for Structural Bioinformatics PDB

Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists.

SIRCh: Molecular Visualization Tools and Sites

SIRCh: Molecular Visualization Tools and Sites

SMILES - A Simplified Chemical Language

Official information source for SMILES (Simplified Molecular Input Line Entry System) by Daylight Chemical Information Systems, Inc.

SMILES Theory Manual

Official Daylight tutorials and theory manual for the SMILES chemical notation system.

Swiss-Model

Swiss-Model

Swiss-PdbViewer (DeepView)

Official homepage for Swiss-PdbViewer (DeepView), developed by the SIB Swiss Institute of Bioinformatics for structural analysis of proteins.

Swiss-PdbViewer (DeepView) Tutorial

Official tutorial for Swiss-PdbViewer (now known as DeepView), an application for viewing and analyzing protein structures.

Teach-Discover-Treat (TDT) | Molecular Modeling Education

An initiative providing educators with open-source tools and tutorials for teaching and learning molecular modeling and computer-aided drug design.

The Cambridge Crystallographic Data Centre (CCDC)

The world"s repository for small-molecule crystal structures. CCDC provides the Cambridge Structural Database (CSD) and related software.

The QSAR and Modelling Society

The QSAR and Modelling Society

Theory Manual

Theory Manual

UCSF ChimeraX

Next-generation molecular visualization program from the UCSF Resource for Biocomputing, Visualization, and Informatics for interactive analysis of molecular structures.

Visualisation of chemical processes for electronic publishing and presentations

Article in the "New Journal of Chemistry" from the Royal Society of Chemistry regarding visualization methods for electronic media.

VMD - Visual Molecular Dynamics

A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. Developed at UIUC.

WebMO - Web-Based Interface to Computational Chemistry

A web-based interface for computational chemistry programs. Allows users to build molecules, run calculations, and visualize results, including vibrational frequencies.

YASARA - Yet Another Scientific Artificial Reality Application

YASARA - Yet Another Scientific Artificial Reality Application




 


 


 






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